Package: toxdrc 1.0.1

Jack Salole

toxdrc: Pipeline for Dose-Response Curve Analysis

Provides a variety of tools for assessing dose response curves, with an emphasis on toxicity test data. The main feature of this package are modular functions which can be combined through the namesake pipeline, 'runtoxdrc', to automate the analysis for large and complex datasets. This includes optional data preprocessing steps, like outlier detection, solvent effects, blank correction, averaging technical replicates, and much more. Additionally, this pipeline is adaptable to any long form dataset, and does not require specific column or group naming to work.

Authors:Jack Salole [aut, cre]

toxdrc_1.0.1.tar.gz
toxdrc_1.0.1.zip(r-4.7)toxdrc_1.0.1.zip(r-4.6)toxdrc_1.0.1.zip(r-4.5)
toxdrc_1.0.1.tgz(r-4.6-any)toxdrc_1.0.1.tgz(r-4.5-any)
toxdrc_1.0.1.tar.gz(r-4.7-any)toxdrc_1.0.1.tar.gz(r-4.6-any)
toxdrc_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
toxdrc/json (API)

# Install 'toxdrc' in R:
install.packages('toxdrc', repos = c('https://jsalole.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jsalole/toxdrc/issues

Datasets:
  • cellglow - Example toxicity test data with multiple experimental groups.
  • toxresult - Example toxicity test data from a single experimental subset.

On CRAN:

Conda:

4.32 score 3 stars 1 scripts 487 downloads 16 exports 78 dependencies

Last updated from:4b1b36f381. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK171
source / vignettesOK189
linux-release-x86_64OK167
macos-release-arm64OK150
macos-oldrel-arm64OK87
windows-develOK121
windows-releaseOK117
windows-oldrelOK103
wasm-releaseOK120

Exports:averageresponseblankcorrectchecktoxicityflagCVgetECxgetmetadatamodelcompnormalizeresponsepctlremoveoutliersruntoxdrctoxdrc_modellingtoxdrc_normalizationtoxdrc_outputtoxdrc_qctoxdrc_toxicity

Dependencies:abindbackportsbootbroomcarcarDataclicodetoolscolorspacecowplotcpp11DerivdoBydplyrdrcfarverforecastFormulafracdiffgenericsggplot2gluegtablegtoolsisobandlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqamodelrmultcompmvtnormnlmenloptrnnetnumDerivoutlierspbkrtestpillarpkgconfigplotrixpurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangS7sandwichscalesSparseMstringistringrsurvivalTH.datatibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo