Package: toxdrc 2.0.0

Jack Salole

toxdrc: Pipeline for Dose-Response Curve Analysis

Provides a variety of tools for assessing dose response curves, with an emphasis on toxicity test data. The main feature of this package are modular functions which can be combined through the namesake pipeline, 'runtoxdrc', to automate the analysis for large and complex datasets. This includes optional data preprocessing steps, like outlier detection, solvent effects, blank correction, averaging technical replicates, and much more. Additionally, this pipeline is adaptable to any long form dataset, and does not require specific column or group naming to work.

Authors:Jack Salole [aut, cre]

toxdrc_2.0.0.tar.gz
toxdrc_2.0.0.zip(r-4.7-any)toxdrc_2.0.0.zip(r-4.6-any)toxdrc_2.0.0.zip(r-4.5-any)
toxdrc_2.0.0.tgz(r-4.6-any)toxdrc_2.0.0.tgz(r-4.5-any)
toxdrc_2.0.0.tar.gz(r-4.7-any)toxdrc_2.0.0.tar.gz(r-4.6-any)
toxdrc_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
toxdrc/json (API)

# Install 'toxdrc' in R:
install.packages('toxdrc', repos = c('https://jsalole.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jsalole/toxdrc/issues

Datasets:
  • acutetox - Simulated acute lethality test data with a quantal endpoint
  • cellglow - Example toxicity test data with multiple experimental groups.
  • toxresult - Example toxicity test data from a single experimental subset.

On CRAN:

Conda:

4.22 score 3 stars 4 scripts 200 downloads 19 exports 77 dependencies

Last updated from:a755e23a8f. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK214
source / vignettesOK447
linux-releaseOK217
macos-releaseOK247
macos-oldrelOK214
windows-develOK183
windows-releaseOK186
windows-oldrelOK173
wasm-releaseOK104

Exports:averageresponseblankcorrectchecktoxicityflagCVgetECxgetmetadatainterpolateECxmodelcompnormalizeresponsepctlremoveoutliersruntoxdrctoxdrc_endpointtoxdrc_modellingtoxdrc_normalizationtoxdrc_outputtoxdrc_presettoxdrc_qctoxdrc_toxicity

Dependencies:abindbackportsbootbroomcarcarDataclicodetoolscolorspacecowplotcpp11DerivdoBydplyrdrcfarverforecastFormulafracdiffgenericsggplot2gluegtablegtoolsisobandlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmgcvminqamodelrmultcompmvtnormnlmenloptrnnetnumDerivoutlierspbkrtestpillarpkgconfigplotrixpurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangS7sandwichscalesSparseMstringistringrsurvivalTH.datatibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo